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Molecular Modelling software
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Molecular Modelling

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Added: January 25, 2010 | Visits: 527

FoldIt light 'FoldIt light' is a molecular modelling program to visualize and manipulate interactively protein structure files from the Brookhaven Protein Data Bank (PDB). It's an integrated environment allowing 3D manipulations as well as statistical analysis.



Platforms: Mac

License: Freeware Size: 5 MB Download (75): FoldIt light Download

Released: August 21, 2013  |  Added: August 21, 2013 | Visits: 78

100% Biochemistry - Textbook and Reference Check out the latest edition to our 100% textbook series! Now you can search for saved pages, add notes and even search for saved pages based on your notes. Make studying easier with this great app!! Biochemistry majors - this is the app for you! Supplement your regular Biochemistry textbook...





Platforms: iOS

License: Shareware Cost: $1.99 USD Size: 2 MB Download (7): 100% Biochemistry - Textbook and Reference Download

Added: August 14, 2013 | Visits: 270

Hidden Markov Models for Molecular Motors Hidden Markov models are used to describe the "stepping" behavior of molecular motors, as measured by single-molecule fluorescence techniques. Our HMM implementation is more versatile than the one described by Milescu, et al. Biophys. J. 91:3135-3150 and can be used as a "blind" step detector or...


Platforms: Matlab

License: Freeware Size: 829.44 KB Download (19): Hidden Markov Models for Molecular Motors Download

Added: August 12, 2013 | Visits: 279

ORMA (Oligonucleotide Retrieving for Molecular Applications) ORMA (Oligonucleotide Retrieving for Molecular Applications) is a series of integrated scripts in Matlab, which performs an accurate search of all the positions able to specifically discriminate one species among homologous ones. ORMA also performs an accurate selection of high-quality...


Platforms: Matlab

License: Freeware Size: 286.72 KB Download (18): ORMA (Oligonucleotide Retrieving for Molecular Applications) Download

Added: November 13, 2013 | Visits: 284

Molecular Dynamics Model The EJS Molecular Dynamics model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated time step. For sufficiently small time steps dt,...


Platforms: Mac

License: Freeware Size: 1.3 MB Download (17): Molecular Dynamics Model Download

Added: July 24, 2013 | Visits: 230

Molecular Dynamics Demonstration Model The EJS Molecular Dynamics Demonstration model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated Time step. For sufficiently small...


Platforms: Mac

License: Freeware Size: 1.3 MB Download (16): Molecular Dynamics Demonstration Model Download

Added: November 12, 2013 | Visits: 288

Molecular Dynamics Adiabatic Piston Model The Molecular Dynamics Adiabatic Piston model shows two gas samples within a horizontal cylinder that is divided by an insulated piston that moves without friction. It is a supplemental simulation for an article by Eric Gislason "A close examination of the motion of an adiabatic piston" in the...


Platforms: Mac

License: Freeware Size: 1.12 MB Download (17): Molecular Dynamics Adiabatic Piston Model Download

Added: June 22, 2013 | Visits: 265

Nanodesigner Nanodesigner is a software platform for research on molecular nanotechnology. It has a plug-in architecture and will include tools for molecular visualization & modelling, design of complex new molecules, molecular dynamics,...


Platforms: *nix

License: Freeware Size: 2.16 MB Download (21): Nanodesigner Download

Added: July 17, 2006 | Visits: 2.222

MeshX MeshX is a basic 3D modelling program, for creating, viewing, editing, and sav


Platforms: Windows

License: Shareware Cost: $20.00 USD Size: 1.64 MB Download (175): MeshX Download

Released: May 26, 2017  |  Added: June 04, 2017 | Visits: 2.011

CHEMIX School CHEMIX School is an educational tool for learning chemistry. It is geared toward college-level chemistry, but is also appropriate for high-school students, chemists, and teachers. It is equipped with a periodic table containing history, 19 physical properties + number of stable isotopes,...


Platforms: Windows, Windows 8, Windows 7, Windows Server

License: Shareware Cost: $19.00 USD Size: 1.45 MB Download (229): CHEMIX School Download

Added: August 12, 2008 | Visits: 1.684

Molecular Weight Calculator for Pocket PC Molecular Weight Calculator is an easy to use program to calculate the mass of a molecular formula and composition of each atom. Allows entry of chemical formulas in commonly-used syntax both empirical and molecuar formula.This innovative program provides a fast and easy-to-use tool. This is an...


Platforms: Pocket PC 2002

License: Commercial Cost: $5.00 USD Size: 453 KB Download (226): Molecular Weight Calculator for Pocket PC Download

Added: May 10, 2013 | Visits: 1.794

Art of Illusion Art of Illusion is a free, open source 3D modelling and rendering studio. Many of its capabilities rival those found in commercial programs. Highlights include subdivision surface based modelling tools, skeleton based animation, and a graphical language for designing procedural textures and...


Platforms: Windows, Mac, *nix, Java, BSD Solaris

License: Freeware Download (170): Art of Illusion Download

Released: July 16, 2009  |  Added: July 23, 2009 | Visits: 1.072

Time Series API Time Series API is a professional C++ class library for simulating (backtesting) and deploying financial trading strategies as well as general purpose time series modelling. The library is a stand-alone time series engine that can be extended via a component object model. Models are defined...


Platforms: Windows

License: Commercial Cost: $334.00 USD Size: 3.4 MB Download (94): Time Series API Download

Added: August 13, 2010 | Visits: 994

Avogadro Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. This project offers a flexible rendering engine and a powerful plugin architecture. The main concept behind Avogadro...


Platforms: *nix

License: Freeware Size: 256 KB Download (138): Avogadro Download

Added: June 20, 2010 | Visits: 608

Games::Othello Games::Othello is a Perl extension for modelling a game of Othello. SYNOPSIS use Games::Othello; my $game = Games::Othello->new(); while( !game->over ) { printf "It is presently %ss move", ($game->whos_move eq b) ? black, white; my @possible_moves = values $game->possible_moves(); if...


Platforms: *nix

License: Freeware Size: 5.12 KB Download (73): Games::Othello Download

Added: October 08, 2010 | Visits: 566

Alzabo Alzabo is a Perl module with data modelling tool and RDBMS-OO mapper. SYNOPSIS Cannot be summarized here. What is Alzabo? Alzabo is a suite of modules with two core functions. Its first use is as a data modelling tool. Through either a schema creation GUI, a perl program, or reverse...


Platforms: *nix

License: Freeware Size: 204.8 KB Download (71): Alzabo Download

Added: October 16, 2010 | Visits: 1.241

DbModeller DbModeller project is a database schema modelling application for building physical database designs. This can connect to an existing database a pull down the schema or create from scratch. It currently allows modelling of tables and referential integrity constraints and generates SQL for the...


Platforms: *nix

License: Freeware Size: 870.4 KB Download (131): DbModeller Download

Added: May 12, 2010 | Visits: 675

ASCEND ASCEND is a flexible modelling environment for solving hard engineering and science problems. It offers: - an object-oriented model description language for describing your system, - an interactive user interface that allows you to solve your model and explore the effect of changing the model...


Platforms: *nix

License: Freeware Size: 2.9 MB Download (87): ASCEND Download

Added: October 23, 2010 | Visits: 523

openModeller openModeller library is a spatial distribution modelling library, providing a uniform method for modelling distribution patterns using a variety of modelling algorithms. openModeller can be used via programatic interfaces, including SOAP and SWIG-python, as well as via a user friendly desktop...


Platforms: *nix

License: Freeware Download (74): openModeller Download

Added: June 26, 2013 | Visits: 632

Ayam Ayam is a free 3D modelling environment for the RenderMan interface, distributed under the BSD licence. This means that neither the author nor any contributors make money out of this software. We need your (yes your!) feedback to keep this project alive. If you use Ayam, please submit your...


Platforms: *nix

License: Freeware Size: 8.61 MB Download (84): Ayam Download

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